List munged summary statistics — list_sumstats • MungeSumstats

Searches for and lists local GWAS summary statistics files munged by format_sumstats or import_sumstats.

list_sumstats(
  save_dir = getwd(),
  pattern = "*.tsv.gz$",
  ids_from_file = TRUE,
  verbose = TRUE
)

Arguments

save_dir: Top-level directory to recursively search for summary statistics files within.
pattern: Regex pattern to search for files with.
ids_from_file: Try to extract dataset IDs from file names. If FALSE, will infer IDs from the directory names instead.
verbose: Print messages.

Named vector of summary stats paths.

save_dir <- system.file("extdata",package = "MungeSumstats")
munged_files <- MungeSumstats::list_sumstats(save_dir = save_dir)
#> 1 file(s) found.