Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

Loads the SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. Reference genome version is dependent on user input.

load_snp_loc_data(ref_genome, dbSNP = c(144, 155), msg = NULL)

Arguments

ref_genome

name of the reference genome used for the GWAS (GRCh37 or GRCh38)

dbSNP

version of dbSNP to be used (144 or 155)

msg

Optional name of the column missing from the dataset in question

Value

SNP_LOC_DATA SNP positions and alleles for Homo sapiens extracted from NCBI dbSNP Build 144

Examples

SNP_LOC_DATA <- load_snp_loc_data("GRCH37",dbSNP=144)
#> Loading SNPlocs data.